Shinsei Iso, Yu Sato, Hiroyuki Kimura (2024) Impacts of groundwater pumping on subterranean microbial communities in a deep aquifer associated with an accretionary prism. Microorganisms 12: 679. (Abstract)

Makoto Matsushita, Shugo Ishikawa, Kenta Magara, Yu Sato, Hiroyuki Kimura (2020) The potential for CH₄ production by syntrophic microbial communities in diverse deep aquifers associated with an accretionary prism and its overlying sedimentary layers. Microbes and Environments 35: ME19103. (Abstract)

Yu Sato, Hiroyuki Kimura (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie van Leeuwenhoek 112: 187-201. (Abstract)

Makoto Matsushita, Kenta Magara, Yu Sato, Naoya Shinzato, Hiroyuki Kimura (2018) Geochemical and microbiological evidence for microbial methane production in deep aquifers of the Cretaceous accretionary prism. Microbes and Environments 33: 205-213. (Abstract)

Yu Sato, Taketomo Fujiwara, Hiroyuki Kimura (2017) Expression and function of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula hispanica at different temperatures. Frontiers in Microbiology 8: 482. (Abstract)

Takunari Kono, Sandhya Mehrotra, Chikako Endo, Natsuko Kizu, Mami Matsuda, Hiroyuki Kimura, Eiichi Mizohata, Tsuyoshi Inoue, Tomohisa Hasunuma, Akiho Yokota, Hiroyoshi Matsumura, Hiroki Ashida (2017) A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea. Nature Communications 8: 14007. (Abstract)

Makoto Matsushita, Shugo Ishikawa, Kazushige Nagai, Yuichiro Hirata, Kunio Ozawa, Satoshi Mitsunobu, Hiroyuki Kimura (2016) Regional variation of CH₄ and N₂ production processes in the deep aquifers of an accretionary prism. Microbes and Environments 31: 329-338. (Abstract)

Kyohei Baito, Satomi Imai, Makoto Matsushita, Miku Otani, Yu Sato, Hiroyuki Kimura (2015) Biogas production using anaerobic groundwater containing a subterranean microbial community associated with the accretionary prism. Microbial Biotechnology 8: 837-845. (Abstract)

Hiroyuki Kimura, Kousuke Mori, Toshiro Yamanaka, Jun-Ichiro Ishibashi (2013) Growth temperatures of archaeal communities can be estimated from the guanine-plus-cytosine contents of 16S rRNA gene fragments. Environmental Microbiology Reports 5: 468-474. (Abstract)

Hiroyuki Kimura, Robert Young, Asuncion Martinez, Edward F. DeLong (2011) Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium. ISME Journal 5: 1641-1651. (Abstract)

Hiroyuki Kimura, Hiroaki Nashimoto, Mikio Shimizu, Shohei Hattori, Keita Yamada, Keisuke Koba, Naohiro Yoshida, Kenji Kato (2010) Microbial methane production in deep aquifer associated with the accretionary prism in Southwest Japan. ISME Journal 4: 531-541. (Abstract)

Hiroyuki Kimura, Kousuke Mori, Hiroaki Nashimoto, Shohei Hattori, Keita Yamada, Keisuke Koba, Naohiro Yoshida, Kenji Kato (2010) Biomass production and energy source of thermophiles in a Japanese alkaline geothermal pool. Environmental Microbiology 12: 480-489. (Abstract)

Hiroyuki Kimura, Jun-Ichiro Ishibashi, Harue Masuda, Kenji Kato, Satoshi Hanada (2007) Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere. Applied and Environmental Microbiology 73: 2110-2117. (Abstract)

Hiroyuki Kimura, Maki Sugihara, Hiroyuki Yamamoto, Bharat K.C. Patel, Kenji Kato, Satoshi Hanada (2005) Microbial community in a geothermal aquifer associated with the subsurface of the Great Artesian Basin, Australia. Extremophiles 9: 407-414. (Abstract)

Hiroyuki Kimura, Ryuji Asada, Andrew Masta, Takeshi Naganuma (2003) Distribution of microorganisms in the subsurface of the Manus Basin hydrothermal vent field, Papua New Guinea. Applied and Environmental Microbiology 69: 644-648. (Abstract)

Hiroyuki Kimura, Tatsuhiro Fukuba, Takeshi Naganuma (1999) Biomass of thraustochytrid protoctists in coastal water. Marine Ecology Progress Series 189: 27-33. (Abstract)